Hi Vertigo -
Send me a private email and I will send you the templates I use for both thconfig and *.th files. Also, xTherion has an input editor for centerline data that you can use when editing a .th file.
Getting a .3d output is as easy as adding a line to your thconfig file. Something like this:
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export model -fmt 3d -o CaveMapfile.3d
Are you on the Therion and Survex mailing lists? If not, you should be.
Bill Gee