I am by no means an expert in either epidemiology or silviculture, but I did recently read a fascinating article in an Ecology class about the Chestnut Blight and the "panic logging" management plan. Here's a link to it on my home server as a pdf:
http://www.unstandardized.com/chestnut.pdf . The main thrust of the article is the connection drawn between the Chestnut succumbing to blight and the extinction of the passenger pigeon that occurred just before the blight set it; the pigeon, with its vast numbers, was the Chestnut's primary source of nutrition. In focusing on the blight, logging firebreaks, etc., the forest managers failed to address the fact that the Chestnut population they were dealing with was, in effect, seriously malnourished, which greatly increased the population's vulnerability. Nobody looked beyond the proximal cause of the pathogen to treat the situation with ecological sophistication; instead we panicked and logged the trees, creating a population with a severely limited gene pool to breed blight resistance.
Reading the research about WNS so far, the situation seems to merit a sophisticated consideration. The Geomyces species is a cold-loving, soil-dwelling pathogen that irritates skin and hair follicles, but the bats are dying with a severely imbalanced digestive system; a lack of enzyme-producing bacteria necessary to process nutrients, erratically spiking metabolic rates, and seriously depleted body fat. All of the bats in the WNS region seem to be losing body fat even before they enter hibernation. If the bat situation is parallel to the Chestnut situation, the best thing we could do might be to attend to the other factors in the bats' lives that affect their health: their nutrition, their various habitats, their vulnerability to predation.
My take on the destroying of populations: I agree with many here that thinking we can actually contain WNS by exterminating all potentially affected bats is fantasy; the quarantine is broken anyway, and we would have to slaughter an awful lot of bats that might hold some chance of being resistant. But the slightly less extreme idea of euthanizing only all visibly affected and collectible bats, bats that to the best of our understanding are doomed anyway by the degree to which they are already affected by WNS, and hoping to therefore slow the spread of the Syndrome and therefore give the rest of the gene pool a better chance to breed resistance (or us a little more time to find a magic bullet) has some sense to it, even if I'm not sure I agree with it. If we
knew the individual bats we euthanized were doomed anyway, then all we would be doing would be hastening natural selection. That makes a certain degree of sense. My major logical argument against that is: how will we know what resistance looks like? In Hamilton Cave (I was on the count that confirmed WNS in that cave), the bats posted near the entrance, flying around in February, had no visible fungus on them, but were probably more severely affected than those bats at the back of the cave with fungus all over them - they had simply groomed the visible fungus away. And might a resistant bat not be affected by the fungus for a few years, looking just like a doomed case, but then recover? And also, what if population resistance ends up being behavioral, rather than genetic: bats choosing particular microclimates within their hibernacula, altering their diet, developing a mutualistic relationship with some other creature? That's my logical argument; it's not infallible. My moral argument is: who are we to euthanize these creatures? We aren't their God or their priest or their doctor or their family. We could probably do them, and all of nature, more of a favor by finding a way to drop our own population and get ourselves and our chemicals out of their lives, but that is never the choice we'll make.
So I guess I'd like to offer some conservative respect for the euthanasia idea, but then return ultimately to the hated adage: it's complicated. In nature, things usually are.